OakRootRNADB Database

Gene: MSTRG.7

You can find all information about gene in the cards below

Gene summary

Feature	Description
Gene name	MSTRG.7
Transcript count	1
Chromosome	Qrob_Chr01
Start	59090
End	63952
Strand	+

Transcripts table

Transcript name	Chromosome	Start	End	Strand
MSTRG.7.1	Qrob_Chr01	59090	63952	+

Gene's transcripts sequences

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>MSTRG.7.1
TAGTCTATCTTAACGGATGCTTAAAACTGGATAGACTACCAGAGAACCTAGGGAATGCTGAAAGTCTAGTGTCGTTGAATTTGAGCGAAACTGCTATAAGAAAGGTCCCTTCTTCCATTGGTCTTTTAAAACATCTTTTTAAAATTCATTTCATACGTAGTACTGCTCTTTAATTGTTTAAGCTTTTACCAAATGAATTTTGTGCTATTTCCTCTTGATGTTCTTGAAGTTTTCTAACTTTTATACCTTTAACTCTGAATAAAATTATTGACTGAAATTTGTACTTACCCATTTCAGATCATGACCAGGGCAAAACTGTTCATGCTCATTTCAAAGGATAAAACAAACCAGAAGACTTATCTCCATAGGTAACTTAGCTTGGCTACCCTATCAAAGTGACTCAACTAGAATTAGAATCAAAGGATAATAGAAGTTAAACCTAAGCGTAGGACAAACTTAGCCATAAATTACTAACCTAATTCTCTAGTGCATAGTCAATCAGGCAAGCAACTATGCAGAAAATGTTGAAAAATAGAGAAGGTATCCTGCTTTGATTGG

>MSTRG.7.1_peptide
unknown

Libraries description

Harvest date	Type of root	Root length	Root vitality	Type of cultivation	Biological replicates
1/2/3	K/KB	kr/sr/dl	NN/NT/TN/TT	kon/rh	1/2/3
1 – First harvest date – 7-weeks old plant (sown in early spring)	K – meristematic zone of the taproot	kr – short root (5 – 9 cm)	NN – normal condition roots	kon – growing in containers	1 – first biological replicate
2 – Second harvest date – 8-weeks old plant (sown in early spring)	KB – lateral root	sr – medium root (9,5 – 15 cm)	NT - dying root	rh – growing in rhizotron	2 – second biological replicate
3 – Third harvest date – 8-weeks old plant (sown in early summer)		dl – long root (15,5 – 35 cm)	TN – thick root		3 – third biological replicate
			TT – thick and dying root

Gene expression table

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Name	TPM
1K_dl_NN_kon1	0.77
1K_dl_NN_kon2	0.86
1K_dl_NN_kon3	0.51
1K_dl_NT_kon1	0.67
1K_dl_NT_kon2	0.90
1K_dl_NT_kon3	0.99
1K_kr_NN_kon1	0.95
1K_kr_NN_kon2	0.00
1K_kr_NN_kon3	0.29
1K_sr_NN_kon1	0.39
1K_sr_NN_kon2	0.94
1K_sr_NN_kon3	1.28
1KB_dl_NN_kon1	3.38
1KB_dl_NN_kon2	1.02
1KB_dl_NN_kon3	1.29
1KB_sr_NN_kon1	1.26
1KB_sr_NN_kon2	2.34
1KB_sr_NN_kon3	1.64
2K_dl_NN_kon1	0.93
2K_dl_NN_kon2	0.97
2K_dl_NN_kon3	0.75
2K_dl_NN_rh1	0.00
2K_dl_NN_rh2	0.71
2K_dl_NN_rh3	0.35
2K_dl_NT_kon1	0.15
2K_dl_NT_kon2	0.69
2K_dl_NT_kon3	1.03
2K_kr_NN_kon1	0.00
2K_kr_NN_kon2	0.00
2K_kr_NN_kon3	0.83
2K_sr_NN_kon1	1.30
2K_sr_NN_kon2	0.98
2K_sr_NN_kon3	0.35
2K_sr_NN_rh1	1.10
2K_sr_NN_rh2	1.64
2K_sr_NN_rh3	1.72
2K_sr_NT_rh1	3.63
2K_sr_NT_rh2	0.00
2K_sr_NT_rh3	1.77
2K_sr_TN_kon1	1.00
2K_sr_TN_kon2	1.35
2K_sr_TN_kon3	1.94
2KB_dl_NN_kon1	1.11
2KB_dl_NN_kon2	2.71
2KB_dl_NN_kon3	0.91
2KB_dl_NN_rh1	1.69
2KB_dl_NN_rh2	2.65
2KB_dl_NN_rh3	2.61
2KB_sr_NN_kon1	1.35
2KB_sr_NN_kon2	2.72
2KB_sr_NN_kon3	1.88
2KB_sr_NN_rh1	1.56
2KB_sr_NN_rh2	2.01
2KB_sr_NN_rh3	4.35
2KB_sr_TN_kon1	2.50
2KB_sr_TN_kon2	3.62
2KB_sr_TN_kon3	4.94
2KB_sr_TN_rh1	0.35
2KB_sr_TN_rh2	0.71
2KB_sr_TN_rh3	0.96
3K_dl_NN_kon1	0.17
3K_dl_NN_kon2	1.06
3K_dl_NN_kon3	0.53
3K_dl_NN_rh1	0.91
3K_dl_NN_rh2	1.15
3K_dl_NN_rh3	1.89
3K_dl_TN_kon1	4.80
3K_dl_TN_kon2	5.17
3K_dl_TN_kon3	4.50
3K_dl_TN_rh1	1.87
3K_dl_TN_rh2	2.11
3K_dl_TN_rh3	2.08
3KB_dl_NN_kon1	0.95
3KB_dl_NN_kon2	0.91
3KB_dl_NN_kon3	1.04

Libraries description

Type of root	Root length	Root vitality	Type of cultivation	Biological replicates
K/KB/SW	kr/sr/dl	NN/NT/TN/TT	kon/rh/krh	1/2/3
K – meristematic zone of the taproot	kr – short root (5 – 9 cm)	NN – normal condition roots	kon – growing in containers	1 – first biological replicate
KB – lateral root	sr – medium root (9,5 – 15 cm)	NT - dying root	rh – growing in rhizotron	2 – second biological replicate
SW – elongation zone of taproot	dl – long root (15,5 – 35 cm)	TN – thick root	krh - growing in a container and then transferred to a rhizotron	3 – third biological replicate
		TT – thick and dying root

Gene expression table

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Name	TPM
K_dl_NN_kon1	0.89
K_dl_NN_kon2	0.97
K_dl_NN_kon3	1.84
K_dl_NN_krh1	0.51
K_dl_NN_krh2	1.66
K_dl_NN_krh3	0.27
K_dl_NN_rh1	0.39
K_dl_NN_rh2	1.52
K_dl_NN_rh3	1.92
K_dl_NT_kon1	1.50
K_dl_NT_kon2	1.60
K_dl_NT_kon3	1.76
K_dl_NT_krh1	0.16
K_dl_NT_krh2	1.08
K_dl_NT_krh3	1.47
K_kr_NN_kon1	0.48
K_kr_NN_kon2	1.51
K_kr_NN_kon3	0.00
K_kr_NN_krh1	1.88
K_kr_NN_krh2	1.66
K_kr_NN_krh3	1.49
K_kr_NN_rh1	0.76
K_kr_NN_rh2	1.13
K_kr_NN_rh3	0.84
K_sr_NN_kon1	1.10
K_sr_NN_kon2	2.65
K_sr_NN_kon3	2.79
K_sr_NN_krh1	0.82
K_sr_NN_krh2	1.30
K_sr_NN_krh3	0.93
K_sr_NN_rh1	0.84
K_sr_NN_rh2	2.09
K_sr_NN_rh3	0.75
K_sr_TT_krh1	2.12
K_sr_TT_krh2	2.12
K_sr_TT_krh3	2.99
K_sr_TT_rh1	2.04
K_sr_TT_rh2	3.04
K_sr_TT_rh3	3.21
KB_dl_NN_kon1	4.80
KB_dl_NN_kon2	2.87
KB_dl_NN_kon3	1.62
KB_dl_NN_krh1	4.81
KB_dl_NN_krh2	3.67
KB_dl_NN_krh3	5.14
KB_dl_NN_rh1	3.42
KB_dl_NN_rh2	5.63
KB_dl_NN_rh3	4.08
KB_dl_NT_kon1	3.89
KB_dl_NT_kon2	3.46
KB_dl_NT_kon3	4.35
KB_sr_NN_kon1	2.91
KB_sr_NN_kon2	4.61
KB_sr_NN_kon3	2.19
KB_sr_NN_rh1	2.50
KB_sr_NN_rh2	2.49
KB_sr_NN_rh3	3.15
KB_sr_TT_krh1	5.40
KB_sr_TT_krh2	3.09
KB_sr_TT_krh3	3.42
SW_dl_NN_kon1	1.55
SW_dl_NN_kon2	1.81
SW_dl_NN_kon3	1.16
SW_dl_NN_krh1	2.31
SW_dl_NN_krh2	4.31
SW_dl_NN_krh3	2.91
SW_dl_NN_rh1	2.85
SW_dl_NN_rh2	3.42
SW_dl_NN_rh3	4.01
SW_dl_NT_kon1	2.09
SW_dl_NT_kon2	4.14
SW_dl_NT_kon3	3.45
SW_dl_NT_krh1	2.44
SW_dl_NT_krh2	1.00
SW_dl_NT_krh3	3.05
SW_sr_NN_kon1	2.49
SW_sr_NN_kon2	4.59
SW_sr_NN_kon3	2.85
SW_sr_NN_rh1	4.60
SW_sr_NN_rh2	3.88
SW_sr_NN_rh3	4.75
SW_sr_NT_rh1	4.13
SW_sr_NT_rh2	3.48
SW_sr_NT_rh3	4.60
SW_sr_TN_krh1	5.00
SW_sr_TN_krh2	2.41
SW_sr_TN_krh3	1.69
SW_sr_TT_krh1	2.26
SW_sr_TT_krh2	1.91
SW_sr_TT_krh3	2.32

Download

Description	Contents	Format
Transcripts	Sequences of all gene transcripts	fasta
Peptides	Sequences of all proteins encoded by gene	fasta
Expression Dataset 1	Two-collumn table with library name and TPM	TSV
Expression Dataset 2	Two-collumn table with library name and TPM	TSV